PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000619501
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family NAC
Protein Properties Length: 169aa    MW: 19447.9 Da    PI: 10.056
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000619501genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM706.3e-22169252125
            NAM  52 kaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel...vglkktLvfykgrapkgektdWvmhe 125
                    +++ k+w+fF++r++++a+g r+++ t++gyWkatg+ ++v+s+++++   + lk+t+vfy+gr p+g+kt+W m+e
  MDP0000619501  16 HGDPKQWFFFIPRQESEARGGRPRQLTTTGYWKATGSPTTVYSSNSKHyraISLKRTMVFYTGRXPHGKKTEWKMNE 92 
                    45678**************************************85444555************************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100521.5591121IPR003441NAC domain
PfamPF023651.9E-9992IPR003441NAC domain
SuperFamilySSF1019413.4E-201692IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MVKKQCTNEA AGEAIHGDPK QWFFFIPRQE SEARGGRPRQ LTTTGYWKAT GSPTTVYSSN  60
SKHYRAISLK RTMVFYTGRX PHGKKTEWKM NETKPLKFMQ MIIINHQWPP PHQTLVLLLP  120
RLSMAQWNSG LDSLQLVSAR HGDQCEDHSH QLFDTGMFHD DPYRFPIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-13139465141NO APICAL MERISTEM PROTEIN
1ut4_B1e-13139465141NO APICAL MERISTEM PROTEIN
1ut7_A1e-13139465141NO APICAL MERISTEM PROTEIN
1ut7_B1e-13139465141NO APICAL MERISTEM PROTEIN
3swm_A1e-13139468144NAC domain-containing protein 19
3swm_B1e-13139468144NAC domain-containing protein 19
3swm_C1e-13139468144NAC domain-containing protein 19
3swm_D1e-13139468144NAC domain-containing protein 19
3swp_A1e-13139468144NAC domain-containing protein 19
3swp_B1e-13139468144NAC domain-containing protein 19
3swp_C1e-13139468144NAC domain-containing protein 19
3swp_D1e-13139468144NAC domain-containing protein 19
4dul_A1e-13139465141NAC domain-containing protein 19
4dul_B1e-13139465141NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009372523.15e-50PREDICTED: NAC domain-containing protein 90-like
SwissprotQ9M2901e-31NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLM5VSR53e-43M5VSR5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s22580.12e-35(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87134123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.16e-33NAC domain containing protein 61